AffiXcan
A Functional Approach To Impute Genetically Regulated Expression
Bioconductor version: 3.23 · Package version: 1.30.0
Impute a GReX (Genetically Regulated Expression) for a set of genes in a sample of individuals, using a method based on the Total Binding Affinity (TBA). Statistical models to impute GReX can be trained with a training dataset where the real total expression values are known.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AffiXcan")Details
| Maintainer | Alessandro Lussana <alessandro.lussana@protonmail.com> |
| Author | Alessandro Lussana [aut, cre] |
| License | GPL-3 |
| Downloads rank | 287 |
| Source branch | RELEASE_3_23 |
| biocViews | DimensionReduction, GeneExpression, GeneRegulation, PrincipalComponent, Regression, Software, Transcription |
Documentation
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Dependencies
Depends: R (>= 3.6), SummarizedExperiment
Imports: MultiAssayExperiment, BiocParallel, crayon