Aerith

visualization and annotation of isotopic enrichment patterns of peptides and metabolites with stable isotope labeling from proteomics and metabolomics

Bioconductor version: 3.23 · Package version: 1.0.1

Visualisation of peptide isotopic peaks and SIP peptide spectra match (PSM). Filtration of high quality PSM. Accurate isotopic abundance calculation of peptide and metabolites. Visualisation of SIP proteomics results.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Aerith")

Details

Maintainer	Yi Xiong <yixiong@ou.edu>
Author	Yi Xiong [aut, cre] (ORCID: <https://orcid.org/0009-0005-4591-2366>)
License	GPL-3
URL	https://github.com/xyz1396/Aerith
Bug Reports	https://github.com/xyz1396/Aerith/issues
System Requirements	C++17
Downloads rank	77
Source branch	RELEASE_3_23
biocViews	Annotation, MassSpectrometry, Metabolomics, Proteomics, QualityControl, Software, Visualization

Documentation

Download

Source package

Dependencies

Depends: R (>= 4.4.0)

Imports: mzR, MSnbase, methods, Rcpp, ggplot2, ggrepel, dplyr, stringr, data.table, scales

LinkingTo: Rcpp

Suggests: knitr, rmarkdown, testthat, tidyr