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AWAggregatorData

Attribute-Weighted Aggregation Data

Bioconductor version: 3.23 · Package version: 1.2.0

The AWAggregatorData package contains the data associated with the AWAggregator R package. It includes two pre-trained random forest models, one incorporating the average coefficient of variation as a feature, and the other one not including it. It also contains the PSMs in Benchmark Set 1~3 derived from the psm.tsv output files generated by FragPipe, which are used to train the random forest models.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AWAggregatorData")

Details

MaintainerJiahua Tan <jiahuatan@chem.ubc.ca>
AuthorJiahua Tan [aut, cre] (ORCID: <https://orcid.org/0000-0001-5839-1049>), Gian L. Negri [aut] (ORCID: <https://orcid.org/0000-0001-7722-8888>), Gregg B. Morin [aut] (ORCID: <https://orcid.org/0000-0001-8949-4374>), David D. Y. Chen [aut] (ORCID: <https://orcid.org/0000-0002-3669-6041>)
LicenseMIT + file LICENSE
URLhttps://github.com/Tan-Jiahua/AWAggregatorData
Bug Reportshttps://github.com/Tan-Jiahua/AWAggregatorData/issues
Downloads rank77
Source branchRELEASE_3_23
biocViewsExperimentData, ExperimentHub, MassSpectrometryData, PackageTypeData, Proteome

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Dependencies

Depends: ExperimentHub

Suggests: BiocStyle, knitr, rmarkdown

Reverse dependencies

Suggests Me (1): AWAggregator