Monday
Morning
130624-brixen-microarrays-huber.key
130624-brixen-microarrays-huber.pdf
130624-gentleman-statistics-intro.pdf
morgan-r-bioconductor-intro.pdf
Afternoon
For Monday / Friday labs, download Morgan2013_1.0.1.tar.gz and install as follows:
biocLite(c("Biostrings", "ShortRead", "Rsamtools",
"GenomicRanges", "rtracklayer", "RNAseqData.HNRNPC.bam.chr14",
"org.Hs.eg.db", "BSgenome.Hsapiens.UCSC.hg19",
"TxDb.Hsapiens.UCSC.hg19.knownGene", "Homo.sapiens",
"TxDb.Dmelanogaster.UCSC.dm3.ensGene", "GO.db", "MotifDb",
"seqnames.db", "SNPlocs.Hsapiens.dbSNP.20120608",
"GenomicFeatures", "biomaRt", "AnnotationHub",
"VariantAnnotation", "ensemblVEP", "VariantTools", "gmapR",
"LungCancerLines", "Gviz", "shiny", "parallel", "lattice",
"edgeR"))
install.packages("Morgan2013_1.0.1.tar.gz", repos=NULL, type="source")
sequences-reads-ranges-alignments.pdf
Tuesday
Morning
morgan-sequences-reads-ranges-alignments-suppl.txt
morgan-sequences-reads-ranges-alignments.pdf
Afternoon
Wednesday
Morning
130626-brixen-machinelearn-huber.key
130626-brixen-machinelearn-huber.pdf
Thursday
Morning
130627-multtestindepfilt-huber.key
130627-multtestindepfilt-huber.pdf
Afternoon
Friday
Morning
130628-brixen-imagephenotyping-huber.pdf