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R / Bioconductor for Everyone

Slides

PDF R Rnw

pData.csv

Differential expression analysis of count data from high-throughput sequencing

DESeq

PDF R Rnw

DEXSeq

PDF R Rnw

High-level S4 containers for HTS data

PDF R Rnw

edgeR - Differential Expression Analysis of RNA-Seq Data

Course Materials

Inferring molecular regulatory networks from expression, genotype and phenotype data with the qpgraph package

Slides

PDF R

Data Files

YeastGG.RData

yeastractRegTwoColTable.tsv

SNPs, SNVs and somatic mutations: Harnessing bioconductor tools for the analysis of next-gen sequence nucleotide variation data

R script 1 R script 2

Applying IRanges, GenomicRanges and Friends to the Analysis of RNA-seq Data

PDF R Rnw

ChIP-seq data analysis using iSeq package

Course Materials