• Day 1: R Package (day1_0.0.1.tar.gz)
  • First Steps with R
  • First Steps with R (solutions)
  • Getting Started with Lattice
  • Basic Lattice (solutions)
  • Building an R Package
  • Building an R Package (solutions)
  • ALL Dataset
• Day 2: R Package (day2_0.0.11.tar.gz)
  • Pre-processing
  • Pre-processing Lab
  • Pre-processing Lab (solutions)
  • Differential Expression
  • Differential Expression (solutions)
  • Gene Set Enrichment Analysis
  • Bioconductor Annotation Packages
• Day 3: R Package (day3_0.0.3.tar.gz)
  • String Basics
  • String Basics (solutions)
  • High throughput sequence I/O, manipulation, and quality assessment
  • ShortRead Lab: Working with Aligned Sequences
  • ShortRead Lab: Working with Aligned Sequences (solutions)
  • Exploratory Data Analysis of Coverage
  • Sequence Annotation
  • Finding RNA-seq Hot Spots
  • Simple RNA-seq Expression Measures
  • ChIP-seq peak identification and analysis