String manipulations, efficient matching, and alignments using Biostrings

An introduction to the Biostrings/BSgenome framework (pdf)

Biostrings/BSgenome Lab (pdf)

Biostrings/BSgenome Lab (R script with solutions)

Sequence Alignment of Short Read Data using Biostrings (pdf)

Sequence Alignment of Short Read Data using Biostrings (R script)

topReads.rda (R data file)